PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016470963.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 255aa    MW: 28860.7 Da    PI: 9.6654
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016470963.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.0003397119223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +C+ C+++++++ +L  H +  H
  XP_016470963.1  97 SCSVCSRVYPTSRLLSIHVSEaH 119
                     6*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.616994IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807194IPR007087Zinc finger, C2H2
SMARTSM003555.496119IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028098119IPR007087Zinc finger, C2H2
SMARTSM003550.38134159IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280136159IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MAMEVETQTQ SQLGFPFWSP IRRRFRPDDP FFTAGNIQRE LFAKQLALDL TEEEKQLVQN  60
ITDEESSNVF CPIVGCGARM RSLDDFEDHY ATRHTASCSV CSRVYPTSRL LSIHVSEAHD  120
SFFQAKVARG FPMYECLVEG CGVKLKSYKS RQQHLVDKHK FPATYEFFRK ARPSKKQRQK  180
IHHKPASRKT QETSSAMQVE DETMDNLVSA VSKLTTSDSP SAISFGRSRA RGLSFVPRAV  240
NRQIGPVTST GGTQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-121HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016470963.10.0PREDICTED: zinc finger protein 511-like
TrEMBLM1BSR11e-167M1BSR1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000520621e-167(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA102112022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-104zinc ion binding;nucleic acid binding;zinc ion binding